Web7 ott 2024 · Summary. Background: The Human Protein Atlas program aims to map human proteins via multiple technologies including imaging, proteomics and transcriptomics. Results: HPAanalyze is an R package for retreiving and performing exploratory data analysis from HPA. It provides functionality for importing data tables and xml files from … Web9 set 2024 · Using HPAanalyze, a typical workflow with HPA downloadable datasets consists of the following steps: 1. Download and import data into R with hpaDownload. 2. …
Frontiers Quantitative SWATH-Based Proteomic Profiling for ...
Web28 giu 2024 · Of note, TissueEnrich uses two landmark datasets, HPA [ 19] and GTEx [ 20] for defining the tissue-specific gene signatures. The hypergeometric test is used to calculate tissue-specific gene enrichment. The P -value ( P) is calculated as: P ( X > k) = ∑ i = k + 1 n ( K i) ( N − k n − i) ( N n) and the fold change is calculated as: Web30 ago 2024 · the CS and CT based analyses of the TCPA and HPA datasets (Figure 3, Supplementary Tables 3-5). For the CT based analyses of both datasets, MAPP based values of some proteins are considerably different from differential expression unlike correlation based values. Unlike PCPP personal amount 2023
HPAanalyze: an R package that facilitates the retrieval and analysis …
WebAll human protein-coding genes are categorized according to detection above cut of (tissue detection category) as well as relative abundance between tissue types (tissue specificity category). A number of 2685 genes are classified as brain elevated and 202 genes were only detected in the brain. Web9 set 2024 · HPAanalyze provides functionality for importing data tables and xml files from HPA, exporting and visualizing data, as well as downloading all staining images of interest. WebRNA HPA tissue gene data Transcript expression levels summarized per gene in 256 tissues based on RNA-seq. The tab-separated file includes Ensembl gene identifier … personal american flags