Ontologyindex r package
Web25 de ago. de 2024 · License. GPL (>= 2) Version. 2.10. Package repository. View on CRAN. Installation. Install the latest version of this package by entering the following in R: install.packages ("ontologyIndex") Web1 de abr. de 2024 · The ontologyIndex package enables arbitrary ontologies to be read into R, supports representation of ontological objects by native R types, and provides a parsimonius set of performant functions for querying ontologies. ontologySimilarity and ontologyPlot extend ontologyIndex with functionality for straightforward visualization and …
Ontologyindex r package
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WebontologyIndex-package {ontologyIndex} R Documentation: Functions for Reading Ontologies into R Description. ... Greene D, Richardson S, Turro E (2024). 'ontologyX: a suite of R packages for working with ontological data. _Bioinformatics_, 33(7), 1104–1106. Web30 de dez. de 2016 · ontologyIndex is an R package which was developed in order to provide a terse, low-level and easy to use set of functions for exploiting the structure of ontologies. Ontologies can be read into R from files in Open Biomedical Ontologies (OBO) format, with most commonly used ontologies available in this format on the OBO …
WebExplore many ontologyIndex R examples and examples, working samples and examples using the R packages. How to do this and that after downloading and installing the package. ... Subject title: R package example; Processing time. 1-5 days; Close. Packages. how to install and use the o2geosocial R package. o2geosocial
Web5.3 Gene Set Enrichment Analysis. A common approach to analyzing gene expression profiles is identifying differentially expressed genes that are deemed interesting. The ORA enrichment analysis is based on these differentially expressed genes. This approach will find genes where the difference is large and will fail where the difference is small, but … Webget_relation_names {ontologyIndex} R Documentation: Get names of relations used in OBO file Description. Get names of relations used in OBO file Usage get_relation_names(file) Arguments. file: File path of OBO formatted file. See Also. get_ontology [Package ...
Web12 de abr. de 2024 · Drugs were screened for potential treatment using the pRRophetic_0.5 package, and the horizontal coordinates of the box plot indicate the risk, with blue indicating low risk, red indicating high risk, and the vertical coordinates indicating the IC50 values of the drugs. We screened nine drugs ((5Z)-7-Oxozeaenol, AP-24534, BEZ235 ...
Web25 de ago. de 2024 · The key functions include get_ontology for creating the index, get_ancestors for computing the set of all terms which are ancestors of at least one from set of terms and get_descendants for getting all terms which descend from a term. The package comes with R objects hpo, mpo and go which index the Human Phenotype … hiking trails in oshawaWebTerm properties are named in the resulting ontology_index as their corresponding tags in the OBO file (except "parents", "children" and "ancestors" which are appended with "_OBO" to avoid clashing with standard ontology_index properties. Defaults to "minimal". merge_equivalent_terms hiking trails in oviedo floridaWeb1 de abr. de 2024 · The ontologyIndex package enables arbitrary ontologies to be read into R, supports representation of ontological objects by native R types, and provides a parsimonius set of performant functions for querying ontologies. ontologySimilarity and ontologyPlot extend ontologyIndex with functionality for straightforward visualization … hiking trails in pa near 19029Web11 de abr. de 2024 · Background: Insulin resistance (IR) is a major contributing factor to the pathogenesis of metabolic syndrome and type 2 diabetes mellitus (T2D). Adipocyte metabolism is known to play a crucial role in IR. Therefore, the aims of this study were to identify metabolism-related proteins that could be used as potential biomarkers of IR and … small webcam lightWeb25 de ago. de 2024 · ontologyIndex is the foundation of the 'ontologyX' packages: . ontologyIndex, for representing ontologies as R objects and enabling simple queries, ; ontologySimilarity, for computing semantic similarity between ontological terms and annotations, ; ontologyPlot for visualising sets of ontological terms with various graphical … small webcam standWeb30 de dez. de 2016 · The ontologyIndex package enables arbitrary ontologies to be read into R, supports representation of ontological objects by native R types, and provides a parsimonius set of performant functions for querying ontologies. Summary: Ontologies are widely used constructs for encoding and analyzing biomedical data, but the absence of … hiking trails in olympic national parkWeb25 de ago. de 2024 · Term properties are named in the resulting ontology_index as their corresponding tags in the OBO file (except "parents", "children" and "ancestors" which are appended with "_OBO" to avoid clashing with standard ontology_index properties. Defaults to "minimal". Logical value determining whether terms that are marked "equivalent_to" a … hiking trails in parker az